7/17/2018
Raw centroids

- median value of markers in each cluster
Normalized centroids

- median z-score of markers in each cluster
Freq cluster

- median z-score of markers in each cluster
Freq population

- median z-score of markers in each cluster
Meta Phenograph +Meta tsne
- colored by “meta” phenograph cluster
Meta Phenograph +Meta tsne
- colored by percent of cells that are naive in original clusters
- keep slide 4 in mind
Meta Phenograph +Meta tsne
- colored by percent of cells that are effector in original clusters
Meta Phenograph +Meta tsne
- colored by percent of cells that are effector memory in original clusters
Meta Phenograph +Meta tsne
- colored by percent of cells that are central memory in original clusters
Meta Phenograph +Meta tsne
- colored by median CD45 (scaled) expression in original clusters
Meta Phenograph +Meta tsne
- colored by median CCR7 (scaled) expression in original clusters
Meta Phenograph +Meta tsne
- colored by median CD28 (scaled) expression in original clusters
Meta Phenograph +Meta tsne
- colored by median CD95 (scaled) expression in original clusters